FASTA program discussion list

[Peter <>]

On Thu, Nov 17, 2011 at 1:24 PM,  
<>
 wrote:
>
> There should be a ':' after '_bits'.
>
> fprintf (fp,"; %s_z-score: %4.1f\n; %s_bits %3.1f\n; %s_expect: %6.2g\n",
>
> should be
>
> fprintf (fp,"; %s_z-score: %4.1f\n; %s_bits: %3.1f\n; %s_expect: %6.2g\n",
>
>
> This is not a big deal. But the parser in BioPython will raise Exception
> because of this.

The latest Biopython code (not yet released) will cope but issue
a warning:

https://github.com/biopython/biopython/commit/b444c7750c53067449a9977e5e197de91710777a

I didn't report this to the FASTA mailing list because I (wrongly)
believed it was already fixed based on version numbers

Peter

See also https://redmine.open-bio.org/issues/3312 and
the recent thread "Missing alignments from lalign36",
https://lists.virginia.edu/sympa/arc/fasta_list/2011-11/msg00001.html