FASTA program discussion list

[Peter Cock <>]

Hello all,

In examining a bug report from Gahoo Lee (BCC'd) against
the Biopython FASTA -m 10 parser, I believe there is a
problem in the output of lalign36. For details see:
https://redmine.open-bio.org/issues/3312

Essentially the output can contain lines like:

>>LOC_Os07g46460.1 1500 bp_Up Chr 07:27738635..27737133 (reverse complemented)

which I expect to mark the beginning of a pairwise
alignment, but no alignment is given.

Is this a known issue? Do you need anymore
information to reproduce it - there are sample
input files attached to the bug report, and the
command line used is present as the first line
of the sample output.

Thanks,

Peter